With the DTI resolution about 300µm and T 2-weighted image resolution about 200µm, many gray and white matter structures can be identified. Here we characterize the transcriptome of 416 brain samples from 52 regions of 8 rhesus macaque brains. The rhesus atlas was created via the macaque atlas (see Macaquefor details). The NeuroMaps 123 segmentation was later refined on the INIA19 adult population in vivo symmetric template 124 (Rohlfing et al., 2012). 1st Edition by J. Wu (Author), M.F. Dubach (Author), J.E. José L. Lanciego, Alfonso Vázquez, The basal ganglia and thalamus of the long-tailed macaque in stereotaxic coordinates. NIH Blueprint Non-Human Primate (NHP) Atlas. This atlas is not based on a single subject but instead is an average constructed from the averaged position, orientation and scale from all the individual subjects and is representative of both the intensities and spatial positioning of anatomical structures. The atlas viewer requries Java 5 or above. Tokyo: University of Tokyo Press, 1970. Abstract To aid in the analysis of rhesus macaque brain images, we aligned digitized anatomical regions from the widely used atlas of Paxinos et al. With the addition of this atlas collection, there are now three Macaca species that have population- average MRI-based atlases: N2K atlas for Macaca nemestrina (Black et al., 2001a, 2004), F6 atlas for Macaca fascicularis (Vincent et al., 2007), and the SL atlas collection, reported here, for Macaca mulatta. to brain atlases for presentation and publication. Construction of spatiotemporal infant cortical surface atlas of rhesus macaque Abstract: As a widely used animal model in MR imaging studies, rhesus macaque helps to better understand both normal and abnormal neural development in the human brain. The white matter tracts were traced with DTI-based tractography. Here we present a brain atlas collection for the adult rhesus macaque (M. mulatta) and review methods for creating multi-modal atlases using an infrastructure that will allow voxel- and surface-based approaches that are common in human brain mapping studies to be readily applied to non-human primate studies. - Tissue_multiAtlas: Multi-atlas for tissue segmentation in macaques, includes left-right mirrored images for symmetric analysis (6-12 months old). It was first presented as a poster and demo session at the INCF booth of SFN 2009 in Chicago. For the generation of the initial brain mask (for the purpose of skull stripping), we employed the UNC-Wisconsin juvenile macaque atlas via ABC (Prastawa et al., 2005). The macaque average atlas is comprised of 25 T1-weighted MRIs of normal young adult macaque brains (18 Macaca fascicularis, 7 Macaca mulatta). The high resolution macaque brain DTI atlas (0.4x0.4x0.4mm), completed by Dr Lei Feng et al, has been released to public in the website (www.brainmrimap.org) hosted by the lab, August, 2017. Primate Brain Maps: Structure of the Macaque Brain: A Laboratory Guide with Original Brain Sections, Printed Atlas and Electronic Templates for Data and Schematics (including CD-ROM). The rhesus macaque average atlas is comprised of 7 T1-weighted MRIs of normal young adult rhesus macaque brains. All these initial, automatically generated brain masks were manually corrected by human expert raters via InsightSNAP (Yushkevich et al… A publication in Neuroinformatics followed in 2015. It uses exploratory work of Gleb Bezgin, creator of the CoCoMac-Paxinos3D tool. Stereotaxic Atlas of the Brain of Macaca fuscata. Single-subject macaque brain DTI template was obtained by transforming the postmortem high-resolution DTI data into in vivo space. Ex vivo DTI of ten macaque brains was then averaged in the in vivo single-subject template space to generate population-averaged macaque brain DTI atlas. Robertson (Author), D.M. The template comprises both whole-head and brain-only unbiased template images, tissue probability maps, a deformation map, as well as cortical surfaces with 3D printed examples, and brain parcellation (label) … Tools and Methods section expanded to include Nomenclature for the rat brain from the Swanson-2004 atlas. The Scalable Brain Atlas is developed by Rembrandt Bakker in collaboration with many others. INIA19 primate brain atlas A detailed atlas informed from over 100 structural MR scans of 19 rhesus macaque animals. Macaque brain atlases generated at UNC-Chapel Hill. The goal of this study is to provide a digital 3D atlas which is expected to be a valuable resource for many macaque-based brain research. 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